System Biology - PIBS
7-11 February 2011
Faculty
José B. Pereira-Leal - IGC
Armindo Salvador - Univ. Coimbra
Julio Saenz-Rodriguez- EMBL EBI
Jorge Carneiro - IGC
Claudine Chaouiya - IGC
Sarah Teichmann - MRC LMB
Schedule
Monday
09:30 - 10:00 - Intro - JPL
10:00 - 10:30 - JC1 - A systematic screen for protein–lipid interactions in Saccharomyces cerevisiae
10:30 - 11:00 - JC2 - The Plasmodium protein network diverges from those of other eukaryotes.
11:00 - 11:30 BREAK
11:30 - 12:00 - JC3 - Network modeling links breast cancer susceptibility and centrosome dysfunction.
12:00 - 12:30 - JC4 - An atlas of combinatorial transcriptional regulation in mouse and man
12:30 - 13:00 - Intro (cont) - JPL
Tuesday
10:00 - 11:30 - Naturally evolved principles of quantitative design in metabolic circuits - AS
11:30 - 12:00 - BREAK
12:00 - 13:00 - IGC seminar
13:00-15:00 - Lunch with AS
15:00 - 15:30 - JC5 - Mathematical Modelling of Cell-Fate Decision in Response to Death Receptor Engagement
15:30 - 16:00 - JC6 - Application of Petri net based analysis techniques to signal transduction pathways
Wednesday
11:00 - 12:30 - Mathematical models of signaling networks and their application to disease - JSR
Thursday
10:00 - 11:30 - Talk tba - JCa.
15:00 - 15:30 - JC7 - The influence of cell mechanics, cell-cell interactions, and proliferation on epithelial packing
15:30 - 16:00 - JC8 - Auxin transport is sufficient to generate a maximum and gradient guiding root growth
16:00 - 16:30 - BREAK
16:30 - 17:30 - Evolution & assembly of protein complexes - ST
Friday
10:00 - 11:30 - Logical modelling to access the dynamics of large regulatory networks - CC
11:30 - 12:00 - BREAK
12:00 - 13:00 - IGC talk - A quantitative view of gene expression levels in T helper cells - ST
13:00 - 14:30 - LUNCH with ST
14:30 - 15:00 - BREAK
15:00 - 15:30 - Project 1 - Robustness
15:30 - 16:00 - Project 2 - Noise
16:00 - 16:30 - Projcet 3 - Bi-stability
16:30 - 17:00 - Project 4 - Pattern formation
Journal clubs and projects
organize yourselves in groups of TWO students (one group of three) - each group will do two JCs and one project
instruction for projects will be given on monday